Suping Zhou

 
2023.
1. Magembe EM, Li H, Taheri A, Zhou S, Ghislain M. Identification of T-DNA structure and insertion site in transgenic crops using targeted capture sequencing. Front Plant Sci. 2023 Jul 12;14:1156665. doi: 10.3389/fpls.2023.1156665. PMID: 37502707; PMCID: PMC10369180.
 
2. Thapa S, Zhou S, O'Hair J, Al Nasr K, Ropelewski A, Li H. Exploring the microbial diversity and characterization of cellulase and hemicellulase genes in goat rumen: a metagenomic approach. BMC Biotechnol. 2023 Dec 4;23(1):51. doi: 10.1186/s12896-023-00821-6. PMID: 38049781; PMCID: PMC10696843.
 
Presentations at 46th Annual Tennessee State University-wide Research Symposium, March 25-29. 2024.
Kajol Pradhan, BENEFICIAL AND TOXIC EFFECTS OF AL ON SWITCHGRASS.

Suping Zhou. HOW THE AGRICULTURAL  BIOTECH RESOURCES ARE USED TO HELP SMALL BUSINESS DURING COVID PERIOD.

Jun Guo, Kajol Pradhan, Priya Thapa, Dibya Magar Thapa, Suping Zhou. The Dose-Dependent Beneficial and Toxic Effects of Al on Switchgrass. GP-054.

Jun Guo. Advisors: Suping Zhou, Sonali. Roy. Developing Gene Editing System for Tomatoes to Generate Stress Tolerant Lines.

Dibya Thapa Magar*, Shourav Bin Rabbani, Priya Thapa, Kajol Pradhan.  Advisor(s):  Suping Zhou, Manar Samad Developing an AI-based System for Analysis of Pollen Thermotolerance.

Dibya Magar, Jun Guo, Kajol Pradhan, Priya Thapa. Advisors: Suping Zhou, Hui Li, Ted Thannhauser.  Proteomics Analysis of Pollen Thermotolerance in Tomato Varieties with Contrasting Heat Tolerance Traits.

 
 
2022. 

  1. Jin X, Cheng C, Qi Q, Zhou S, Wang C, Zhang Y, Sun C, Wang Y, Dang R, Yang S.  PpERF1b-like  enhances lignin synthesis in pear ( Pyrus pyrifolia ) 'hard-end' fruit. Front Plant Sci. 2022 Dec 15;13:1087388. doi: 10.3389/fpls.2022.1087388. PMID: 36589086; PMCID: PMC9797680.

  2. Hui Li, Yaoguo Qin, Xingbo Wu, Joshua O'Hair, Jesse Potts, Suping Zhou, Yong Yang, Tara Fish, Theodore W. Thannhauser. Identification of heat-induced proteomes in meitoic pollen mother cells of tomato 'Maxifort' using single-cell-type tandem mass tag (TMT) proteomics. Vegetable Research (2022)2: 2.

  3. Jesse Potts, Hui Li, YaoGuo Qin, Xingbo Wu, Dafeng Hui, Kamal Al Nasr, Suping Zhou, Yang Yong, Tara Fish, Jiping Liu, Theodore W. Thannhauser. Using single cell type proteomics to identify Al-induced proteomes in outer layer cells and interior tissues in the apical meristem/cell division regions of tomato root-tips. Journal of Proteomics (2022): 104486. doi.org/10.1016/j.jprot.2022.104486.

  4. OHair J, Jin Q, Yu D, Wu J, Wang H, Zhou S, Huang H. Non-sterile fermentation of food waste using thermophilic and alkaliphilic Bacillus licheniformis YNP5-TSU for 2,3-butanediol production. Waste Manag. 2021 Feb 1;120:248-256. doi: 10.1016/j.wasman.2020.11.029. Epub 2020 Dec 10. PMID: 33310601.
  5. Joshua O'Hair, Qing Jin, Dajun Yu, Nicholas Poe, Hui Li, Santosh Thapa, Suping Zhou*, Haibo Huang*. Thermophillic and Alkaliphilic Bacillus licheniformis YNP5-TSU as an Ideal Candidate for 2,3 Butanediol Production. ACS Sustainable Chem. 2020, 08, 30, 11244-11252. https://doi.org/10.1021/acssuschemeng.0c02759.
  6. Duan, Y., Santiago, F., Reis, A., Figueiredo, M., Zhou, S., Thannhauser, T.W., Li, L. 2021. Genotypic variation of flavonols and antioxidant capacity in broccoli. Food Chemistry. 338:127997. https://doi.org/10.1016/j.foodchem.2020.127997.
    DOI:   https://doi.org/10.1016/j.foodchem.2020.127997
  7. Hui Li, Joshua O’Hair, Santosh Thapa, Sarabjit Bhatti, Suping Zhou, Yong Yang, Tara Fish, Theodore W. Thannhauser. 2020. Proteome profile changes during poly-hydroxybutyrate intracellular mobilization in gram positive Bacillus cereus tsu1. BMC Microbiol 20, 122. https://doi.org/10.1186/s12866-020-01815-6.
  8. Xiudong Sun, Hui Li, Santosh Thapa, Sasikiran Sangireddy, Xiaobo Pei, Wei Liu, Yuping Jiang, Shaolan Yang,  Dafeng Hui, Sarabjit Bhatti, Suping Zhou*, Yong Yang, Tara Fish, Theodore Thannhauser*. 2020. Al-induced proteomics changes in tomato plants over-expressing a glyoxalase I gene. Hortic Res 7, 43. https://doi.org/10.1038/s41438-020-0264-x.
  9. Zhujia Ye, Sasikiran Sangireddy, Chih-Li Yu, Dafeng Hui, Kevin Howe, Tara Fish, Theodore W. Thannhauser, and Suping Zhou. 2020. Comparative Proteomics of Root Apex and Root Elongation Zones Provides Insights into Molecular Mechanisms for Drought Stress and Recovery Adjustment in Switchgrass. Proteomes. 8, 3; doi:10.3390/proteomes8010003.
  10. Shaolan Yang, Hui Li, Sarabjit Bhatti, Suping Zhou, Yong Yang, Tara Fish, Theodore W. Thannhauser, 2020. The Al-induced proteomes of epidermal and outer cortical cells in root apex of cherry tomato ‘LA 2710’, Journal of Proteomics, 211:103560.
  11. Mingtong Li, Chenxia Cheng, Xinfu Zhang, Suping Zhou, Caihong Wang, Chunhui Ma, Shaolan Yang*. 2019. NAC induced lignification during pear fruit hard-end disorder. Molecules. 27;24(23). pii: E4338. doi: 10.3390/molecules24234338.
  12. Joshua O’Hair, Hui Li, Mahesh Rangu, Santosh Thapa, Yong Yang, Tara Fish, Sarabjit Bhatti, Theodore W. Thannhauser, Suping Zhou. 2019. Proteomic Effects of Magnesium Stress on Biofilm Associated Proteins Isolated from Cellulolytic Bacillus licheniformis YNP5-TSU. J Proteomics Bioinform 12:7. doi: 10.35248/0974-276X.19.12.504.
  13. Santosh Thapa, Hui Li, Joshua O’Hair, Sarabjit Bhatti, Fur Chi Chen, Kamal Al Nasr, Terrance Johnson and Suping Zhou*. 2019. Bio-chemical Characteristics of Microbial Enzymes and Their Significance from Industrial Perspectives. Molecular Biotechnology. 61 (8): 579–601.
  14. Hui Li, Yingde Zhu, Mahesh Rangu, Xingbo Wu, Sarabjit Bhatti, Suping Zhou*, Yong Yang, Tara Fish and Theodore W. Thannhauser*. 2018. Identification of Heat-Induced Proteomes in Tomato Microspores Using LCM- Proteomics Analysis. Single Cell Biol. 7: 173. Doi: 10.4172/2168-9431.1000173.
  15. Muhammad Younas Khan Barozaia, Zhujia Ye, Sasikiran Reddy Sangireddy, Suping Zhou. 2018. Bioinformatics profiling and expressional studies of microRNAs in root, stem, and leaf of the bioenergy plant switchgrass (Panicum virgatum L.) under drought stress. Agri Gene, Volume 8, Pages 1-8. doi.org/10.1016/j.aggene.2018.02.001.
  16. Mahesh Rangu, Zhujia Ye, Sarabjit Bhatti, Suping Zhou, Yong Yang, Tara Fish and Theodore W. Thannhauser. 2018. Association of Proteomics Changes with Al-sensitive Root Zones in Switchgrass. Proteomes. 6(2), 15; doi:10.3390/proteomes6020015.
  17. Santosh Thapa, Hui Li, Joshua O’Hair, Sarabjit Bhatti, Suping Zhou. 2017. Metagenomics Prospective in Bio-mining The Microbial Enzymes. J Genes Proteins 1:1.
  18. Joshua O’Hair, Hui Li, Santosh Thapa, Matthew B. Scholz, Suping Zhou. 2017. Draft Genome Sequences of Three Cellulolytic Bacillus licheniformis Strains Isolated from Imperial Geyser, Amphitheater Springs, and Whiterock Springs inside Yellowstone National Park. Genome Announcements. 5(13):e00065-17. doi:10.1128/genomeA.00065-17.
  19. Joshua O’Hair, Hui Li, Santosh Thapa, Matthew B. Scholz, Suping Zhou. 2017. Draft Genome Sequence of Bacillus licheniformis Strain YNP1-TSU Isolated from Whiterock Springs in Yellowstone National Park. Genome Announcements. 5(9):e01496-16. doi:10.1128/genomeA.01496-16.
  20. Hui Li, Suping Zhou, Terrance Johnson, Koen Vercruysse, Ouyang Lizhi, Parthasarathy Ranganathan, Nsoki Phambu, Alexander J. Ropelewski, and Theodore W. Thannhauser. 2017. Genome Structure of Bacillus cereus tsu1 and Genes Involved in Cellulose Degradation and Poly-3-Hydroxybutyrate Synthesis. International Journal of Polymer Science. Volume 2017, Article ID 6192924. https://doi.org/10.1155/2017/6192924.
  21. Sasikiran Sangireddy, Ikenna Okekeogbu, Zhujia Ye, Suping Zhou, Kevin J. Howe, Tara Fish, and Theodore W. Thannhauser. 2017. Effects of Al3+ and La3+ Trivalent Metal Ions on Tomato Fruit Proteomes. Proteomes. 5(1), 7; doi:10.3390/proteomes5010007
  22. Yuping Jiang, Xiaotao Ding, Dong Zhang, Qi Deng, Chih-Li Yu, Suping Zhou, Dafeng Hui. 2017. Soil salinity increases the tolerance of excessive sulfur fumigation stress in tomato plants. Environmental and Experimental Botany. 133: 70–77.
  23. Sasikiran Sangireddy, Zhujia Ye, Sarabjit Bhatti, XiaoBo Pei, Muhammad Younas Khan Barozai, Theodore Thannhauser, Suping Zhou. 2017. Chapter 6: Proteins in phytohormone signaling pathways for abiotic stress in plants. In Girdhar k Pandey eds. Mechanism of Plant Hormone Signaling under Stress.

  24. Joshua A. O’Hair, Terrance L. Johnson, Anthony O. Ejiofor, Suping Zhou. 2016. Reducing inconsistent cellulolytic screenings during the Gram’s Iodine Assay. Cellulose. 23 (5): 3389-3392.

  25. Zhujia Ye, Sasikiran Sangireddy, Ikenna Okekeogbu, Suping Zhou, Chih-Li Yu, Dafeng Hui, Kevin Howe, Tara Fish, Theodore W. Thannhauser*. 2016. Drought-Induced Leaf Proteome Changes in Switchgrass Seedlings. Int. J. Mol. Sci., 17, 1251. doi:10. 3390/ijms17081251.

  26. Yingde Zhu, Hui Li, Sarabjit Bhatti, Suping Zhou, Yong Yang, Tara Fish, Theodore W. Thannhauser*. 2016. Development of a laser-capture-microdissection-based single-cell-type proteomics tool for studying proteomes of individual cell layers of plant roots. Horticulture Research 3, Article number: 16026. doi:10.1038/hortres.2016.26.
  27. Suping Zhou, Ikenna Okekeogbu, Sasikiran Sangireddy, Zhujia Ye, Hui Li, Sarabjit Bhatti, Dafeng Hui, Daniel W. McDonald, Yong Yang, Shree Giri, Kevin Howe, Tara Fish, Theodore W. Thannhauser*. 2016. Proteome modification in tomato plants upon long-term aluminum treatment. J. Proteome Res. 6;15(5):1670-84.

  28. Suping Zhou, et al. 2016. Organic Strawberry Production in Tennessee, USA, and areas of comparable climate in China. In Nandwani Dillip. ed. Organic farming for sustainable agriculture, p37-69.  ISBN 978-3-319-26803-3_2.

  29. Suping Zhou, Theodore W. Thannhauser. 2015. Plant cell and organellular proteomics and salinity tolerance in plants. In Shabir Hussain Wani, Mohammad Anwar Hossain edit: Managing Salt Tolerance in Plants: Molecular and Genomic Perspectives. ISBN-13: 978-1482245134 ISBN-10: 1482245132.
  30. Himabindu Gazula, Kathleen Yan, Sarabjit Bhatti, Fur-chi Chen, Suping Zhou, Theodore William Thannhauser. 2014. Detection of Human Pathogens on Fresh Strawberries. Environmental Science and Technology. 2: 158-162.


  31. Hui Li, Suping Zhou, Terrance Johnson, Koen Vercruysse, Alex J. Ropelewski, Theodore W. Thannhauser TW. 2014. Draft genome sequence of a new Bacillus cereus strain tsu1. Genome Announc. 2(6):e01294-14. doi:10.1128/genomeA.01294-14.


  32. Ikenna Okekeogbu, Zhujia Ye, Sasikiran Sangireddy, Hui Li, Sarabjit Bhatti, Dafeng Hui, Suping Zhou, Kevin J. Howe, Tara Fish, Yong Yang and Theodore W. Thannhauser. 2014. Effect of aluminum treatment on proteomes of radicles of seeds derived from Al treated tomato plants. Proteomes. 2: 169-190. doi:10.3390/proteomes2020169.


  33. Peter Nveawiah-Yoho, Jing Zhou, Marsha Palmer, Roger Sauve, Suping Zhou, Kevin J. Howe, Tara Fish, and Theodore W. Thannhauser. 2013. Identification of proteins for salt tolerance using a comparative proteomics analysis of tomato accessions with contrasting salt tolerance. J. Amer. Soc. Hort. Sci. 138:382-394.


  34. Suping Zhou, Marsha Palmer, Jing Zhou, Sarabjit Bhatti, Kevin Howe, Tara Fish, Theodore W. Thannhauser. 2013. Differential root proteome expression in tomato genotypes with contrasting drought tolerance exposed to dehydration. Journal of the American Society for Horticultural Science. 138:131-141.


  35. Jing Zhou, Sasikiran Sangireddy, Suping Zhou, Roger J. Sauvé, Sarabjit Bhatti, Tara Fish, Theodore W. Thannhauser. 2012. Effect of heat stress on leaf proteome and enzyme activity in Solanum chilense. Plant Stress. 6(1):8-13.


  36. Zong Liu, Roger Sauve, Suping Zhou. 2012. Identification of molecular mechanism for freeze tolerance in flower buds of Helleborus orientalis. Plant Stress. 6(1):1-7.


  37. Suping Zhou, Roger J. Sauvé, Zong Liu, Sasikiran Sangireddy, Sarabjit Bhatti, Simon D. Hucko, Tara Fish, Theodore W. Thannhauser. 2011. Identification of salt-induced changes in leaf and root proteomes of the wild tomato, Solanum chilense. Journal of the American Society for Horticultural Science. 136:288–302.


  38. Suping Zhou, Roger J. Sauvé, Zong Liu, Sasikiran Sangireddy, Sarabjit Bhatti, Simon D. Hucko, Yang Yong, Tara Fish, and Theodore W. Thannhauser. 2011. Heat-induced proteome changes in tomato leaves. Journal of the American Society for Horticultural Science. 136:219-226.


  39. Jing Zhou, Brian Copeland, Cheng Zhang, Zong Liu, Sarabjit Bhatti, Roger Sauve. Suping Zhou. 2011. Identification of prokaryotic organisms in goat rumen based on metagenomic DNA sequences. Journal of research in Biology. 6: 451-455.


  40. Suping Zhou, Jing Zhou, Roger Sauve. 2011. Identification of genes for cold hardiness in Japanese spurge. Journal of research in Biology. 5: 001-009.


  41. Suping Zhou, Roger Sauve, Tara Fish, and Thoedore Thannhauser. 2009. Salt induced and salt repressed protein in tomato. Journal of the American Society for Horticultural Science. 134:289-294.


  42. Suping Zhou, Roger Sauve, and Theodore W Thannhauser. 2009. Aluminum induced proteome changes in tomato cotyledons. Plant Signal Behav. 4(8): 769–772.


  43. Suping Zhou, Roger Sauve, and Theodore W Thannhauser. 2009. Proteome changes induced by aluminum stress in tomato roots. J. Exp. Bot. 60:1849–1857.


  44. Suping Zhou, Roger Sauve, Braden Boone, Shawn Levy.2008. Identification of genes associated with aluminum toxicity in tomato roots using cDNAmicroarrays. Plant Stress. 2:113-120.


  45. Suping Zhou, Jonathan D. Meade, Samuel Nahashon, and Peng Liang. 2008. Genome-wide analysis of mRNA expression by fluorescent differential display in Khalid Mekse and Guenter Kahl eds. The Handbook of Plant Functional Genomics: Concepts and Protocols. 163-186.


  46. Irina Berezin, Emil Brook, Keren Mizrahi, Talya Mizrachy-Dagry, Meirav Elazar, Suping Zhou, Orit Shaul. 2008. Overexpression of the vacuolar metal/proton exchanger AtMHX in tomato causes decreased cell expansion and modifications in the mineral content. Functional Plant Biology. 35:15–25.


  47. Suping Zhou, Shu Wei, Braden Boone, Shawn Levy. 2007. Microarray analysis of genes affected by salt stress in tomato. African J Environ Sci Techno. 1:014-026.


  48. Suping Zhou, Abraham Abraha. 2007. Response to heat stress in warm season and cool season turf grass cultivars. Scientific Research Essay. 2:095-100.


  49. Suping Zhou, Fur-chi Chen, Roger Sauve. 2007. Structure and Temperature Regulated Expression of A Cysteine Protease Gene in Pachysandra terminalis Sieb. & Zucc. Journal of American Society of Hortscience. 132:1-5.


  50. Suping Zhou, Fur-chi Chen, Samuel Nahashon, Tingting Chen. 2006. Cloning and Characterization of Glycolate Oxidase and NADH-Dependent Hydropyruvate Reductase Genes in Pachysandra terminals. Hortscience. 132:1-5.


  51. Suping Zhou, Roger Sauve. 2006. Genetic Fingerprints of Goldenseal. Native Plants. Spring.73-77.


  52. Suping Zhou, Roger Sauve and Abudullah Abudullah. 2005. Identification of genes regulated by low temperature in Pachysandra terminalis Sieb .et Zucc using cDNA differential display. HortScience. 40(7):1995-1997.


  53. Roger J Sauve, Suping Zhou, Yingchun Yu and Wolfram George Schmid. 2005. Randomly Amplified Polymorphic DNA analysis in the Genus Hosta. HortScience. 40(5):1243-1245.


  54. Suping Zhou, Roger Sauve, Margaret Mmbaga. 2005. Adaptation of Pachysandra terminalis Sieb. & Zucc. to Freezing Temperatures by the Accumulation of mRNA and Antifreeze Proteins. HortScience. 40(2):346-347.


  55. Suping Zhou, Roger Sauve and Chaim Frenkel. 2005. Cold- induced antioxidant enzyme changes in Leucanthemum maximum ‘Silver Princess”. HortScience. 40(3):546-548.


  56. Roger Sauve, Margaret Mmbaga and Suping Zhou. 2004. In vitro regeneration of the Tennessee coneflower (Echinacea Tennesseenis). In vitro Cell. Dev. Biol. Plant. 40:325-328.


  57. Ahmad Aziz, Roger Sauve, Suping Zhou, and Xianzhang Meng. 2003. Micorprojectile-mediated genetic transformation and regeneration of Chinese elm. Canadian Journal of Plant Science. 587-591.


  58. Suping Zhou, Roger Sauve, Eric F. Harward. 2002. Identification of a cell wall peroxidase in red calli of Prunus incisa Thunb. Plant Cell Report. 21: 380-384.


  59. Suping Zhou and Roger Sauve. 2002. Use of Fluorescent- amplified fragment length polymorphism for species identification in the genus Pulmonaria. J Environ Hort. 20(2):110-113.


  60. Suping Zhou, et al. 1999. Induction and characterization of in vitro corms of diploid taro. Plant Cell, Tissue and Organ Culture. 57:173-178.


  61. Suping Zhou, et al. 1999. Morphological mechanism of corm development of diploid and triploid taro. Acta.Bot.Broeal.-Occident. Sinica,19(3)408-414.
  62. Suping Zhou, et al. 1999. In vitro Culture of sour cherry. Communications of Plant Physiology. 35(4) 301-302.

 

 

Presentations:

2020-2021

Jesse Potts, Genome editing to improve tomato (Solanum lycopersicum) tolerance to aluminum toxicity. 2021 TSU Research Symposium, Tuesday, March 23, 2021 

Suping Zhou. Al-Induced Proteomics Changes in Tomato Plants over-Expressing a Glyoxalase I Gene. ASHS, 2020;

Hui Li, Suping Zhou. The Heat-Induced Proteomes Profile Changes in Pollen Mother Cells of Tomato ‘Maxifort’ (Lycopersicon Esculentum X Lycopericon Hirsutum), ASHS, 2020

 

 





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